Package index
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calculateDistMatOneModel() - Calculate Distance Matrix Using a Single Model
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downsampling() - Downsampling Cells
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estimateProb() - Estimate the Empirical Probability of Whether Two Set of Cells from Distinct Batches Belong to the Same Population
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finalClustering() - Final Clustering Step for Meta-Clustering
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gatherInitialClusters() - Gather Initial Cluster Names
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getDistMat() - Calculate the Similarity Matrix
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getGroupFit() - Calculate IDER-Based Similarity Between Two Groups
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getIDEr() - Compute IDER-Based Similarity
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hdbscan.seurat() - Initial Clustering for Evaluating Integration
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initialClustering() - Initial Clustering
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mergeInitialClusters() - Merge Initial Clusters
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pancreas_meta - Pancreas Metadata
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plotDistMat() - Plot Similarity Matrix with pheatmap
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plotHeatmap() - Plot Heatmap for the IDER-Based Similarity Matrix
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plotNetwork() - Plot Network Graph
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scatterPlot() - Scatterplot by a selected feature